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1.
Proteins ; 92(4): 554-566, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38041394

RESUMEN

NADH cytochrome b5 oxidoreductase (Ncb5or) is a cytosolic ferric reductase implicated in diabetes and neurological conditions. Ncb5or comprises cytochrome b5 (b5 ) and cytochrome b5 reductase (b5 R) domains separated by a CHORD-Sgt1 (CS) linker domain. Ncb5or redox activity depends on proper inter-domain interactions to mediate electron transfer from NADH or NADPH via FAD to heme. While full-length human Ncb5or has proven resistant to crystallization, we have succeeded in obtaining high-resolution atomic structures of the b5 domain and a construct containing the CS and b5 R domains (CS/b5 R). Ncb5or also contains an N-terminal intrinsically disordered region of 50 residues that has no homologs in other protein families in animals but features a distinctive, conserved L34 MDWIRL40 motif also present in reduced lateral root formation (RLF) protein in rice and increased recombination center 21 in baker's yeast, all attaching to a b5 domain. After unsuccessful attempts at crystallizing a human Ncb5or construct comprising the N-terminal region naturally fused to the b5 domain, we were able to obtain a high-resolution atomic structure of a recombinant rice RLF construct corresponding to residues 25-129 of human Ncb5or (52% sequence identity; 74% similarity). The structure reveals Trp120 (corresponding to invariant Trp37 in Ncb5or) to be part of an 11-residue α-helix (S116 QMDWLKLTRT126 ) packing against two of the four helices in the b5 domain that surround heme (α2 and α5). The Trp120 side chain forms a network of interactions with the side chains of four highly conserved residues corresponding to Tyr85 and Tyr88 (α2), Cys124 (α5), and Leu47 in Ncb5or. Circular dichroism measurements of human Ncb5or fragments further support a key role of Trp37 in nucleating the formation of the N-terminal helix, whose location in the N/b5 module suggests a role in regulating the function of this multi-domain redox enzyme. This study revealed for the first time an ancient origin of a helical motif in the N/b5 module as reflected by its existence in a class of cytochrome b5 proteins from three kingdoms among eukaryotes.


Asunto(s)
Citocromos b , NAD , Animales , Humanos , Citocromo-B(5) Reductasa/química , Oxidorreductasas , Hemo/química
2.
Free Radic Biol Med ; 207: 144-160, 2023 10.
Artículo en Inglés | MEDLINE | ID: mdl-37463636

RESUMEN

Cytochrome b5 reductase 3 (CYB5R3) activates respiratory metabolism in cellular systems and exerts a prolongevity action in transgenic mice overexpressing this enzyme, mimicking some of the beneficial effects of calorie restriction. The aim of our study was to investigate the role of sex on metabolic adaptations elicited by CYB5R3 overexpression, and how key markers related with mitochondrial function are modulated in skeletal muscle, one of the major contributors to resting energy expenditure. Young CYB5R3 transgenic mice did not exhibit the striking adaptations in carbon metabolism previously detected in older animals. CYB5R3 was efficiently overexpressed and targeted to mitochondria in skeletal muscle from transgenic mice regardless sex. Overexpression significantly elevated NADH in both sexes, although differences were not statistically significant for NAD+, and increased the abundance of cytochrome c and the fission protein DRP-1 in females but not in males. Moreover, while mitochondrial biogenesis and function markers (as TFAM, NRF-1 and cleaved SIRT3) were markedly upregulated by CYB5R3 overexpression in females, a downregulation was observed in males. Ultrastructural changes were also highlighted, with an increase in the number of mitochondria per surface unit, and in the size of intermyofibrillar mitochondria in transgenic females compared with their wild-type controls. Our results support that CYB5R3 overexpression upregulates markers consistent with enhanced mitochondrial biogenesis and function, and increases mitochondrial abundance in skeletal muscle, producing most of these potentially beneficial actions in females.


Asunto(s)
Citocromo-B(5) Reductasa , Mitocondrias , Animales , Femenino , Masculino , Ratones , Proteínas Portadoras/metabolismo , Citocromo-B(5) Reductasa/química , Citocromo-B(5) Reductasa/metabolismo , Metabolismo Energético/genética , Ratones Transgénicos , Mitocondrias/genética , Mitocondrias/metabolismo , Músculo Esquelético/metabolismo , Factores Sexuales
3.
Nat Commun ; 13(1): 7857, 2022 12 21.
Artículo en Inglés | MEDLINE | ID: mdl-36543799

RESUMEN

Protein modification by ubiquitin-like proteins (UBLs) amplifies limited genome information and regulates diverse cellular processes, including translation, autophagy and antiviral pathways. Ubiquitin-fold modifier 1 (UFM1) is a UBL covalently conjugated with intracellular proteins through ufmylation, a reaction analogous to ubiquitylation. Ufmylation is involved in processes such as endoplasmic reticulum (ER)-associated protein degradation, ribosome-associated protein quality control at the ER and ER-phagy. However, it remains unclear how ufmylation regulates such distinct ER-related functions. Here we identify a UFM1 substrate, NADH-cytochrome b5 reductase 3 (CYB5R3), that localizes on the ER membrane. Ufmylation of CYB5R3 depends on the E3 components UFL1 and UFBP1 on the ER, and converts CYB5R3 into its inactive form. Ufmylated CYB5R3 is recognized by UFBP1 through the UFM1-interacting motif, which plays an important role in the further uyfmylation of CYB5R3. Ufmylated CYB5R3 is degraded in lysosomes, which depends on the autophagy-related protein Atg7- and the autophagy-adaptor protein CDK5RAP3. Mutations of CYB5R3 and genes involved in the UFM1 system cause hereditary developmental disorders, and ufmylation-defective Cyb5r3 knock-in mice exhibit microcephaly. Our results indicate that CYB5R3 ufmylation induces ER-phagy, which is indispensable for brain development.


Asunto(s)
Autofagia , Citocromo-B(5) Reductasa , Retículo Endoplásmico , Ubiquitinas , Animales , Ratones , Autofagia/fisiología , Proteínas de Ciclo Celular/metabolismo , Citocromo-B(5) Reductasa/química , Citocromo-B(5) Reductasa/metabolismo , Retículo Endoplásmico/metabolismo , Procesamiento Proteico-Postraduccional , Ubiquitinación/fisiología , Ubiquitinas/química , Ubiquitinas/metabolismo
4.
J Agric Food Chem ; 70(16): 5186-5196, 2022 Apr 27.
Artículo en Inglés | MEDLINE | ID: mdl-35416034

RESUMEN

The electron-transfer capabilities of cytochrome b5 reductase (Cyt b5R) and NADPH supply have been shown to be critical factors in microbial fatty acid synthesis. Unfortunately, Cyt b5R substrate specificity is limited to the coenzyme NADH. In this study, we discovered that a novel Cyt b5R from Mortierella alpina (MaCytb5RII) displays affinity for NADPH and NADH. The enzymatic characteristics of high-purity MaCytb5RII were determined with the Km,NADPH and Km,NADH being 0.42 and 0.07 mM, respectively. MaCytb5RII shows high specific activity at 4 °C and pH 9.0. We anchored the residues that interacted with the coenzymes using the homology models of MaCytb5Rs docking NAD(P)H and FAD. The enzyme activity analysis of the purified mutants MaCytb5RII[S230N], MaCytb5RII[Y242F], and MaCytb5RII[S272A] revealed that Ser230 is essential for MaCytb5RII to have dual NAD(P)H dependence, whereas Tyr242 influences MaCytb5RII's NADPH affinity and Ala272 greatly decreases MaCytb5RII's NADH affinity.


Asunto(s)
Citocromo-B(5) Reductasa , NAD , Citocromo-B(5) Reductasa/química , Citocromo-B(5) Reductasa/genética , Citocromo-B(5) Reductasa/metabolismo , Citocromos b , Cinética , Mortierella , NAD/metabolismo , NADP
5.
Molecules ; 28(1)2022 Dec 23.
Artículo en Inglés | MEDLINE | ID: mdl-36615312

RESUMEN

Cytochrome b5 reductase (Cb5R) is a flavoprotein that participates in the reduction of multiple biological redox partners. Co-localization of this protein with nitric oxide sources has been observed in neurons. In addition, the generation of superoxide anion radical by Cb5R has been observed. A search for specific inhibitors of Cb5R to understand the role of this protein in these new functions has been initiated. Previous studies have shown the ability of different flavonoids to inhibit Cb5R. Anthocyanins are a subgroup of flavonoids responsible for most red and blue colors found in flowers and fruits. Although usually represented by the flavylium cation form, these species are only stable at rather acidic pH values (pH ≤ 1). At higher pH values, the flavylium cation is involved in a dynamic reaction network comprising different neutral species with the potential ability to inhibit the activities of Cb5R. This study aims to provide insights into the molecular mechanism of interaction between flavonoids and Cb5R using flavylium salts as dynamic inhibitors. The outcome of this study might lead to the design of improved specific enzyme inhibitors in the future.


Asunto(s)
Antocianinas , Sales (Química) , Humanos , Citocromo-B(5) Reductasa/química , Citocromo-B(5) Reductasa/metabolismo , Superóxidos , Flavonoides/farmacología , Cationes
6.
STAR Protoc ; 2(1): 100360, 2021 03 19.
Artículo en Inglés | MEDLINE | ID: mdl-33718888

RESUMEN

Lipid peroxidation of polyunsaturated fatty acid (PUFA) phospholipids induces necrotic cell death through compromised cell membrane integrity during ferroptosis. We established assays to investigate oxidoreductase-mediated oxidative rupture, specifically via NADPH-cytochrome P450 reductase (POR) and NADH-cytochrome b5 reductase (CYB5R1), of PUFA phospholipids in artificially generated protein-free liposomes. Liposome breakage was detected via Tb3+ liposome release and electron microscopy liposome morphology imaging. This protocol was also applied to other oxidoreductases with analogous functions and investigation of ferroptotic membrane damage in cell-free systems. For complete details on the use and execution of this protocol, please refer to Yan et al. (2020).


Asunto(s)
Sistema Enzimático del Citocromo P-450/química , Citocromo-B(5) Reductasa/química , Ácidos Grasos Insaturados/química , Animales , Bovinos , Humanos , Liposomas , Oxidación-Reducción
7.
Int J Biol Macromol ; 171: 465-479, 2021 Feb 28.
Artículo en Inglés | MEDLINE | ID: mdl-33428952

RESUMEN

The ubiquitous nature of hemoglobins, their presence in multiple forms and low cellular expression in organisms suggests alternative physiological functions of hemoglobins in addition to oxygen transport and storage. Previous research has proposed enzymatic function of hemoglobins such as nitric oxide dioxygenase, nitrite reductase and hydroxylamine reductase. In all these enzymatic functions, active ferrous form of hemoglobin is converted to ferric form and reconversion of ferric to ferrous through reduction partners is under active investigation. The model alga C. reinhardtii contains multiple globins and is thus expected to have multiple putative methemoglobin reductases to augment the physiological functions of the novel hemoglobins. In this regard, three putative methemoglobin reductases and three algal hemoglobins were characterized. Our results signify that the identified putative methemoglobin reductases can reduce algal methemoglobins in a nonspecific manner under in vitro conditions. Enzyme kinetics of two putative methemoglobin reductases with methemoglobins as substrates and in silico analysis support interaction between the hemoglobins and the two reduction partners as also observed in vitro. Our investigation on algal methemoglobin reductases underpins the valuable chemistry of nitric oxide with the newly discovered hemoglobins to ensure their physiological relevance, with multiple hemoglobins probably necessitating the presence of multiple reductases.


Asunto(s)
Chlamydomonas reinhardtii/enzimología , Citocromo-B(5) Reductasa/fisiología , Oxigenasas/metabolismo , Proteínas de Plantas/fisiología , Hemoglobinas Truncadas/metabolismo , Técnicas de Química Analítica , Chlamydomonas reinhardtii/genética , Chlamydomonas reinhardtii/metabolismo , Secuencia Conservada , Citocromo-B(5) Reductasa/química , Citocromo-B(5) Reductasa/genética , Citocromo-B(5) Reductasa/aislamiento & purificación , Humanos , Cinética , Metahemoglobina/metabolismo , Modelos Moleculares , Simulación del Acoplamiento Molecular , Oxidación-Reducción , Proteínas de Plantas/aislamiento & purificación , Conformación Proteica , Dominios Proteicos , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Homología de Secuencia de Aminoácido , Electricidad Estática , Especificidad por Sustrato , Hemoglobinas Truncadas/genética , Hemoglobinas Truncadas/aislamiento & purificación
8.
Hum Mutat ; 41(4): 737-748, 2020 04.
Artículo en Inglés | MEDLINE | ID: mdl-31898843

RESUMEN

NADH-cytochrome b5 reductase 3 deficiency is an important genetic cause of recessive congenital methemoglobinemia (RCM) and occurs worldwide in autosomal recessive inheritance. In this Mutation Update, we provide a comprehensive review of all the pathogenic mutations and their molecular pathology in RCM along with the molecular basis of RCM in 21 new patients from the Indian population, including four novel variants: c.103A>C (p.Thr35Pro), c.190C>G (p.Leu64Val), c.310G>T (p.Gly104Cys), and c.352C>T (p.His118Tyr). In this update, over 78 different variants have been described for RCM globally. Molecular modeling of all the variants reported in CYB5R3 justifies association with the varying severity of the disease. The majority of the mutations associated with the severe form with a neurological disorder (RCM Type 2) were associated with the FAD-binding domain of the protein while the rest were located in another domain of the protein (RCM Type 1).


Asunto(s)
Citocromo-B(5) Reductasa/genética , Genes Recesivos , Estudios de Asociación Genética , Predisposición Genética a la Enfermedad , Metahemoglobinemia/congénito , Mutación , Alelos , Sustitución de Aminoácidos , Citocromo-B(5) Reductasa/química , Estudios de Asociación Genética/métodos , Genotipo , Humanos , Metahemoglobinemia/diagnóstico , Metahemoglobinemia/genética , Modelos Moleculares , Fenotipo , Conformación Proteica , Relación Estructura-Actividad
9.
Acta Crystallogr D Struct Biol ; 75(Pt 7): 628-638, 2019 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-31282472

RESUMEN

Ncb5or (NADH-cytochrome b5 oxidoreductase), a cytosolic ferric reductase implicated in diabetes and neurological diseases, comprises three distinct domains, cytochrome b5 (b5) and cytochrome b5 reductase (b5R) domains separated by a CHORD-Sgt1 (CS) domain, and a novel 50-residue N-terminal region. Understanding how interdomain interactions in Ncb5or facilitate the shuttling of electrons from NAD(P)H to heme, and how the process compares with the microsomal b5 (Cyb5A) and b5R (Cyb5R3) system, is of interest. A high-resolution structure of the b5 domain (PDB entry 3lf5) has previously been reported, which exhibits substantial differences in comparison to Cyb5A. The structural characterization of a construct comprising the naturally fused CS and b5R domains with bound FAD and NAD+ (PDB entry 6mv1) or NADP+ (PDB entry 6mv2) is now reported. The structures reveal that the linker between the CS and b5R cores is more ordered than predicted, with much of it extending the ß-sandwich motif of the CS domain. This limits the flexibility between the two domains, which recognize one another via a short ß-sheet motif and a network of conserved side-chain hydrogen bonds, salt bridges and cation-π interactions. Notable differences in FAD-protein interactions in Ncb5or and Cyb5R3 provide insight into the selectivity for docking of their respective b5 redox partners. The structures also afford a structural explanation for the unusual ability of Ncb5or to utilize both NADH and NADPH, and represent the first examples of native, fully oxidized b5R family members in which the nicotinamide ring of NAD(P)+ resides in the active site. Finally, the structures, together with sequence alignments, show that the b5R domain is more closely related to single-domain Cyb5R proteins from plants, fungi and some protists than to Cyb5R3 from animals.


Asunto(s)
Citocromo-B(5) Reductasa/química , Citocromos b5/química , NADP/química , Proteínas Portadoras/química , Dominio Catalítico , Cristalización , Hemo/química , Humanos , Enlace de Hidrógeno , Cinética , Proteínas de la Membrana/química , Modelos Moleculares , Complejos Multiproteicos , NAD/química , Oxidación-Reducción , Proteínas de Unión a Fosfato , Conformación Proteica en Lámina beta , Dominios Proteicos , Proteínas Recombinantes/química
10.
Int J Biol Macromol ; 111: 1175-1182, 2018 May.
Artículo en Inglés | MEDLINE | ID: mdl-29371148

RESUMEN

Rapid accumulations of unattached green macroalgae, referred to as blooms, constitute ecological disasters and occur in many coastal regions. Ulva are a major cause of blooms, owing to their high nitrogen utilization capacity, which requires nitrate reductase (NR) activity; however, molecular characterization of Ulva NR remains lacking. Herein we determined the crystal structure and performed an enzymatic analysis of the cytochrome b5 reductase domain of Ulva prolifera NR (UpCbRNR). The structural analysis revealed an N-terminal FAD-binding domain primarily consisting of six antiparallel ß strands, a C-terminal NADH-binding domain forming a Rossmann fold, and a three ß-stranded linker region connecting these two domains. The FAD cofactor was located in the cleft between the two domains and interacted primarily with the FAD-binding domain. UpCbRNR shares similarities in overall structure and cofactor interactions with homologs, and its catalytic ability is comparable to that of higher plant CbRNRs. Structure and sequence comparisons of homologs revealed two regions of sequence length variation potentially useful for phylogenetic analysis: one in the FAD-binding domain, specific to U. prolifera, and another in the linker region that may be used to differentiate between plant, fungi, and animal homologs. Our data will facilitate molecular-level understanding of nitrate assimilation in Ulva.


Asunto(s)
Citocromo-B(5) Reductasa/química , Citocromos b5/química , Conformación Proteica en Lámina beta , Ulva/enzimología , Secuencia de Aminoácidos , Sitios de Unión , Cristalografía por Rayos X , Flavina-Adenina Dinucleótido/química , Nitrógeno/metabolismo , Conformación Proteica , Dominios Proteicos , Pliegue de Proteína
11.
Biochim Biophys Acta Bioenerg ; 1859(2): 78-87, 2018 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-29111436

RESUMEN

Cytochrome b5 is the main electron acceptor of cytochrome b5 reductase. The interacting domain between both human proteins has been unidentified up to date and very little is known about its redox properties modulation upon complex formation. In this article, we characterized the protein/protein interacting interface by solution NMR and molecular docking. In addition, upon complex formation, we measured an increase of cytochrome b5 reductase flavin autofluorescence that was dependent upon the presence of cytochrome b5. Data analysis of these results allowed us to calculate a dissociation constant value between proteins of 0.5±0.1µM and a 1:1 stoichiometry for the complex formation. In addition, a 30mV negative shift of cytochrome b5 reductase redox potential in presence of cytochrome b5 was also measured. These experiments suggest that the FAD group of cytochrome b5 reductase increase its solvent exposition upon complex formation promoting an efficient electron transfer between the proteins.


Asunto(s)
Citocromo-B(5) Reductasa/química , Citocromos b5/química , Flavina-Adenina Dinucleótido/química , Simulación del Acoplamiento Molecular , Citocromo-B(5) Reductasa/genética , Citocromo-B(5) Reductasa/metabolismo , Citocromos b5/genética , Citocromos b5/metabolismo , Flavina-Adenina Dinucleótido/genética , Flavina-Adenina Dinucleótido/metabolismo , Humanos , Espectroscopía de Resonancia Magnética , Oxidación-Reducción , Dominios Proteicos
12.
Redox Biol ; 15: 109-114, 2018 05.
Artículo en Inglés | MEDLINE | ID: mdl-29227865

RESUMEN

In this work, we measured the effect of cytochrome c on the NADH-dependent superoxide anion production by synaptic plasma membrane vesicles from rat brain. In these membranes, the cytochrome c stimulated NADH-dependent superoxide anion production was inhibited by antibodies against cytochrome b5 reductase linking the production to this enzyme. Measurement of the superoxide anion radical generated by purified recombinant soluble and membrane cytochrome b5 reductase corroborates the production of the radical by different enzyme isoforms. In the presence of cytochrome c, a burst of superoxide anion as well as the reduction of cytochrome c by cytochrome b5 reductase was measured. Complex formation between both proteins suggests that cytochrome b5 reductase is one of the major partners of cytochrome c upon its release from mitochondria to the cytosol during apoptosis. Superoxide anion production and cytochrome c reduction are the consequences of the stimulated NADH consumption by cytochrome b5 reductase upon complex formation with cytochrome c and suggest a major role of this enzyme as an anti-apoptotic protein during cell death.


Asunto(s)
Apoptosis/genética , Citocromo-B(5) Reductasa/metabolismo , Citocromos c/metabolismo , Complejos Multiproteicos/metabolismo , Animales , Citocromo-B(5) Reductasa/química , Citocromo-B(5) Reductasa/genética , Citocromos c/química , Cinética , Complejos Multiproteicos/química , Neuronas/química , Neuronas/metabolismo , Ratas , Superóxidos/química , Membranas Sinápticas/genética , Membranas Sinápticas/metabolismo
13.
Biochemistry ; 56(30): 3993-4004, 2017 08 01.
Artículo en Inglés | MEDLINE | ID: mdl-28671819

RESUMEN

Cytoglobin is a heme-containing protein ubiquitous in mammalian tissues. Unlike the evolutionarily related proteins hemoglobin and myoglobin, cytoglobin shows a six-coordinated heme binding, with the heme iron coordinated by two histidine side chains. Cytoglobin is involved in cytoprotection pathways through yet undefined mechanisms, and it has recently been demonstrated that cytoglobin has redox signaling properties via nitric oxide (NO) and nitrite metabolism. The reduced, ferrous cytoglobin can bind oxygen and will react with NO in a dioxygenation reaction to form nitrate, which dampens NO signaling. When deoxygenated, cytoglobin can bind nitrite and reduce it to NO. This oxidoreductase activity could be catalytic if an effective reduction system exists to regenerate the reduced heme species. The nature of the physiological cytoglobin reducing system is unknown, although it has been proposed that ascorbate and cytochrome b5 could fulfill this role. Here we describe that physiological concentrations of cytochrome b5 and cytochrome b5 reductase can reduce human and fish cytoglobins at rates up to 250-fold higher than those reported for their known physiological substrates, hemoglobin and myoglobin, and up to 100-fold faster than 5 mM ascorbate. These data suggest that the cytochrome b5/cytochrome b5 reductase system is a viable reductant for cytoglobin in vivo, allowing for catalytic oxidoreductase activity.


Asunto(s)
Citocromo-B(5) Reductasa/metabolismo , Citocromos b5/metabolismo , Globinas/metabolismo , Modelos Moleculares , NAD/metabolismo , Óxido Nítrico/metabolismo , Oxigenasas/metabolismo , Animales , Antioxidantes/química , Biocatálisis , Simulación por Computador , Citocromo-B(5) Reductasa/química , Citocromo-B(5) Reductasa/genética , Citocromos b5/química , Citocromos b5/genética , Citoglobina , Globinas/química , Globinas/genética , Humanos , Cinética , Proteínas del Tejido Nervioso/química , Proteínas del Tejido Nervioso/genética , Proteínas del Tejido Nervioso/metabolismo , Neuroglobina , Oxidación-Reducción , Oxigenasas/química , Oxigenasas/genética , Conformación Proteica , Isoformas de Proteínas/química , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Homología Estructural de Proteína , Proteínas de Pez Cebra/química , Proteínas de Pez Cebra/genética , Proteínas de Pez Cebra/metabolismo
14.
Sci Rep ; 7: 43162, 2017 02 22.
Artículo en Inglés | MEDLINE | ID: mdl-28225078

RESUMEN

Flavin compounds such as flavin adenine dinucleotide (FAD), flavin mononucleotide and riboflavin make up the active centers in flavoproteins that facilitate various oxidoreductive processes. The fine structural features of the hydrogens and valence electrons of the flavin molecules in the protein environment are critical to the functions of the flavoproteins. However, information on these features cannot be obtained from conventional protein X-ray analyses at ordinary resolution. Here we report the charge density analysis of a flavoenzyme, NADH-cytochrome b5 reductase (b5R), at an ultra-high resolution of 0.78 Å. Valence electrons on the FAD cofactor as well as the peptide portion, which are clearly visualized even after the conventional refinement, are analyzed by the multipolar atomic model refinement. The topological analysis for the determined electron density reveals the valence electronic structure of the isoalloxazine ring of FAD and hydrogen-bonding interactions with the protein environment. The tetrahedral electronic distribution around the N5 atom of FAD in b5R is stabilized by hydrogen bonding with CαH of Tyr65 and amide-H of Thr66. The hydrogen bonding network leads to His49 composing the cytochrome b5-binding site via non-classical hydrogen bonds between N5 of FAD and CαH of Tyr65 and O of Tyr65 and CßH of His49.


Asunto(s)
Citocromo-B(5) Reductasa/química , Dinitrocresoles/química , Electrones , Animales , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Enlace de Hidrógeno , Modelos Moleculares , Conformación Proteica , Proteínas Recombinantes/química , Porcinos
15.
Cell Biochem Biophys ; 74(4): 449-457, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-27372904

RESUMEN

Visinin-like proteins (VILIPs) belong to the calcium sensor protein family. VILIP-1 has been examined as a cerebrospinal fluid biomarker and as a potential indicator for cognitive decline in Alzheimer's disease (AD). However, little is known about VILIP-3 protein biochemistry. We performed co-immunoprecipitation experiments to examine whether VILIP-3 can interact with reduced nicotine adenine dinucleotide (NADH)-cytochrome b 5 reductase. We also evaluated the specificity of cytochrome b 5 within the visinin-like protein subfamily and identified cytochrome P450 isoforms in the brain. In this study, we show that cytochrome b 5 has an affinity for hippocalcin, neurocalcin-δ, and VILIP-3, but not visinin-like protein-1. VILIP-3 was also shown to interact with NADH-cytochrome b 5 reductase in a Ca2+-dependent manner. These results suggest that VILIP-3, hippocalcin, and neurocalcin-δ provide a Ca2+-dependent modulation to the NADH-dependent microsomal electron transport. The results also suggest that future therapeutic strategies that target calcium-signaling pathways and VILIPs may be of value.


Asunto(s)
Proteínas de Unión al Calcio/metabolismo , Citocromo-B(5) Reductasa/metabolismo , Citocromos b5/metabolismo , Proteínas del Tejido Nervioso/metabolismo , Secuencia de Aminoácidos , Animales , Encéfalo/metabolismo , Calcio/química , Calcio/metabolismo , Proteínas de Unión al Calcio/genética , Citocromo P-450 CYP4A/metabolismo , Citocromo-B(5) Reductasa/química , Citocromos b5/química , Células HEK293 , Hipocalcina/química , Hipocalcina/metabolismo , Humanos , Inmunoprecipitación , Iones/química , Masculino , Ratones , Ratones Endogámicos C57BL , Datos de Secuencia Molecular , Proteínas del Tejido Nervioso/genética , Neurocalcina/química , Neurocalcina/metabolismo , Plásmidos/genética , Plásmidos/metabolismo , Unión Proteica , Alineación de Secuencia
16.
J Phys Chem B ; 120(33): 8193-207, 2016 08 25.
Artículo en Inglés | MEDLINE | ID: mdl-27059440

RESUMEN

Brownian dynamics (BD) simulations provide here a theoretical atomic-level treatment of the reduction of human ferric cytochrome b5 (cyt b5) by NADH-cytochrome b5 reductaste (cyt b5r) and several of its mutants. BD is used to calculate the second-order rate constant of electron transfer (ET) between the proteins for direct correlation with experiments. Interestingly, the inclusion of electrostatic forces dramatically increases the reaction rate of the native proteins despite the overall negative charge of both proteins. The role played by electrostatic charge distribution in stabilizing the ET complexes and the role of mutations of several amino acid residues in stabilizing or destabilizing the complexes are analyzed. The complex with the shortest ET reaction distance (d = 6.58 Å) from rigid body BD is further subjected to 1 ns of molecular dynamics (MD) in a periodic box of TIP3P water to produce a more stable complex allowed by flexibility and with a shorter average reaction distance d = 6.02 Å. We predict a docking model in which the following ion-ion interactions are dominant (cyt b5r/cyt b5): Lys162-Heme O1D/Lys163-Asp64/Arg91-Heme O1A/Lys125-Asp70.


Asunto(s)
Citocromo-B(5) Reductasa/química , Citocromos b5/química , Electrones , Flavina-Adenina Dinucleótido/química , Hemo/química , NAD/química , Sustitución de Aminoácidos , Sitios de Unión , Citocromo-B(5) Reductasa/metabolismo , Citocromos b5/metabolismo , Transporte de Electrón , Flavina-Adenina Dinucleótido/metabolismo , Hemo/metabolismo , Humanos , Cinética , Simulación del Acoplamiento Molecular , Simulación de Dinámica Molecular , Mutación , NAD/metabolismo , Unión Proteica , Dominios y Motivos de Interacción de Proteínas , Estructura Secundaria de Proteína , Electricidad Estática , Termodinámica
17.
PLoS One ; 10(10): e0140424, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26466337

RESUMEN

The eukaryotic microsomal cytochrome P450 systems consist of a cytochrome P450 enzyme (P450) and a cytochrome P450 redox partner, which generally is a cytochrome P450 reductase (CPR) that supplies electrons from NADPH. However, alternative electron donors may exist such as cytochrome b5 reductase and cytochrome b5 (CBR and CYB5, respectively) via, which is NADH-dependent and are also anchored to the endoplasmic reticulum. In the carotenogenic yeast Xanthophyllomyces dendrorhous, three P450-encoding genes have been described: crtS is involved in carotenogenesis and the CYP51 and CYP61 genes are both implicated in ergosterol biosynthesis. This yeast has a single CPR (encoded by the crtR gene), and a crtR- mutant does not produce astaxanthin. Considering that this mutant is viable, the existence of alternative cytochrome P450 electron donors like CBR and CYB5 could operate in this yeast. The aim of this work was to characterize the X. dendrorhous CBR encoding gene and to study its involvement in P450 reactions in ergosterol and carotenoid biosynthesis. Two CBRs genes were identified (CBR.1 and CBR.2), and deletion mutants were constructed. The two mutants and the wild-type strain showed similar sterol production, with ergosterol being the main sterol produced. The crtR- mutant strain produced a lower proportion of ergosterol than did the parental strain. These results indicate that even though one of the two CBR genes could be involved in ergosterol biosynthesis, crtR complements their absence in the cbr- mutant strains, at least for ergosterol production. The higher NADH-dependent cytochrome c reductase activity together with the higher transcript levels of CBR.1 and CYB5 in the crtR- mutant as well as the lower NADH-dependent activity in CBS-cbr.1- strongly suggest that CBR.1-CYB5 via participates as an alternative electron donor pathway for P450 enzymes involved in ergosterol biosynthesis in X. dendrorhous.


Asunto(s)
Basidiomycota/genética , Citocromo-B(5) Reductasa/genética , Proteínas Fúngicas/genética , Secuencia de Aminoácidos , Basidiomycota/enzimología , Carotenoides/biosíntesis , Carotenoides/genética , Citocromo-B(5) Reductasa/química , Citocromo-B(5) Reductasa/metabolismo , Ergosterol/biosíntesis , Ergosterol/genética , Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , Datos de Secuencia Molecular
18.
J Biol Chem ; 290(27): 16861-72, 2015 Jul 03.
Artículo en Inglés | MEDLINE | ID: mdl-26001785

RESUMEN

NADH cytochrome b5 reductase 3 (CYB5R3) is critical for reductive reactions such as fatty acid elongation, cholesterol biosynthesis, drug metabolism, and methemoglobin reduction. Although the physiological and metabolic importance of CYB5R3 has been established in hepatocytes and erythrocytes, emerging investigations suggest that CYB5R3 is critical for nitric oxide signaling and vascular function. However, advancement toward fully understanding CYB5R3 function has been limited due to a lack of potent small molecule inhibitors. Because of this restriction, we modeled the binding mode of propylthiouracil, a weak inhibitor of CYB5R3 (IC50 = ∼275 µM), and used it as a guide to predict thiouracil-biased inhibitors from the set of commercially available compounds in the ZINC database. Using this approach, we validated two new potent derivatives of propylthiouracil, ZINC05626394 (IC50 = 10.81 µM) and ZINC39395747 (IC50 = 9.14 µM), both of which inhibit CYB5R3 activity in cultured cells. Moreover, we found that ZINC39395747 significantly increased NO bioavailability in renal vascular cells, augmented renal blood flow, and decreased systemic blood pressure in response to vasoconstrictors in spontaneously hypertensive rats. These compounds will serve as a new tool to examine the biological functions of CYB5R3 in physiology and disease and also as a platform for new drug development.


Asunto(s)
Citocromo-B(5) Reductasa/química , Inhibidores Enzimáticos/química , Óxido Nítrico/metabolismo , Propiltiouracilo/química , Animales , Citocromo-B(5) Reductasa/genética , Citocromo-B(5) Reductasa/metabolismo , Diseño de Fármacos , Inhibidores Enzimáticos/metabolismo , Humanos , Estructura Molecular , Propiltiouracilo/metabolismo , Ratas
19.
Artículo en Inglés | MEDLINE | ID: mdl-25829149

RESUMEN

For oxygen respiration, a methemoglobin (metHb) reduction system is needed in the cell because metHb cannot bind oxygen. We examined the insect Propsilocerus akamusi larvae to elucidate the metHb reduction system in an organism that inhabits an oxygen-deficient environment. NADH-dependent reduction of metHb in coelomic fluid suggested the coexistence of cytochrome b5 reductase (b5R) and cytochrome b5 with hemoglobin in the fluid and that these proteins were involved in physiological metHb reduction in the larvae. The presence of b5R was revealed by purifying b5R to homogeneity from the midge larvae. Using purified components, we showed that larval metHb was reduced via the NADH-b5R (FAD)-cytochrome b5-metHb pathway, a finding consistent with that in aerobic vertebrates, specifically humans and rabbits, and b5R function between mammal and insect was conserved. b5R was identified as a monomeric FAD-containing enzyme; it had a molecular mass of 33.2 kDa in gel-filtration chromatography and approximately 37 kDa in SDS-PAGE analysis. The enzyme's optimal pH and temperature were 6.4 and 25 °C, respectively. The apparent Km and Vmax values were 345 µM and 160 µmol min(-1) mg(-1), respectively, for ferricyanide and 328 µM and 500 µmol min(-1) mg(-1), respectively, for 2,6-dichlorophenolindophenol. The enzyme reaction was inhibited by benzoate, p-hydroxymercuribenzoate, iodoacetamide, and iodoacetate, and was not inhibited by metal ions or EDTA.


Asunto(s)
Citocromo-B(5) Reductasa/metabolismo , Dípteros/enzimología , Metahemoglobina/metabolismo , Animales , Citocromo-B(5) Reductasa/química , Citocromo-B(5) Reductasa/aislamiento & purificación , Dípteros/metabolismo , Larva/enzimología , Larva/metabolismo , Oxidación-Reducción
20.
Clin Genet ; 87(1): 62-7, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-24266649

RESUMEN

We report the clinical features and molecular characterization of 23 patients with cyanosis due to NADH-cytochrome b5 reductase (NADH-CYB5R) deficiency from India. The patients with type I recessive congenital methemoglobinemia (RCM) presented with mild to severe cyanosis only whereas patients with type II RCM had cyanosis associated with severe neurological impairment. Thirteen mutations were identified which included 11 missense mutations causing single amino acid changes (p.Arg49Trp, p.Arg58Gln, p.Pro145Ser, p.Gly155Glu, p.Arg160Pro, p.Met177Ile, p.Met177Val, p.Ile178Thr, p.Ala179Thr, p.Thr238Met, and p.Val253Met), one stop codon mutation (p.Trp236X) and one splice-site mutation (p.Gly76Ser). Seven of these mutations (p.Arg50Trp, p.Gly155Glu, p.Arg160Pro, p.Met177Ile, p.Met177Val, p.Ile178Thr, and p.Thr238Met) were novel. Two mutations (p.Gly76Ser and p.Trp236X) were identified for the first time in the homozygous state globally causing type II RCM. We used the three-dimensional (3D) structure of human erythrocyte NADH-CYB5R to evaluate the protein structural context of the affected residues. Our data provides a rationale for the observed enzyme deficiency and contributes to a better understanding of the genotype-phenotype correlation in NADH-CYB5R deficiency.


Asunto(s)
Cianosis/patología , Citocromo-B(5) Reductasa/deficiencia , Genes Recesivos/genética , Metahemoglobinemia/congénito , Modelos Moleculares , Adolescente , Adulto , Niño , Preescolar , Codón sin Sentido/genética , Cianosis/etiología , Citocromo-B(5) Reductasa/química , Citocromo-B(5) Reductasa/genética , Frecuencia de los Genes , Humanos , India/epidemiología , Lactante , Masculino , Metahemoglobinemia/complicaciones , Metahemoglobinemia/epidemiología , Metahemoglobinemia/genética , Metahemoglobinemia/patología , Mutación Missense/genética , Conformación Proteica
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